人类hg18版本到hg19版本的坐标转换 UCSC: convert from hg18 to hg19

http://genome.ucsc.edu/cgi-bin/hgLiftOver

This tool converts genome coordinates and genome annotation files between assemblies.  The input data can be pasted into the text box, or uploaded from a file.  If a pair of assemblies cannot be selected from the pull-down menus, a direct lift between them is unavailable.  However, a sequential lift may be possible.  Example: lift from Mouse, May 2004, to Mouse, Feb. 2006, and then from Mouse, Feb. 2006 to Mouse, July 2007 to achieve a lift from mm5 to mm9.

mouse-mm9-dbsnp_132-vcf-version

We are pleased to announce the  release of VCF version dbSNP build 132, available on the mouse assembly (UCSC/mm9). dbSNP build 132 is available at NCBI.

This  dbSNP_132 VCF version can be used to  GATK  pipeline.

Many thanks to dbSNP at NCBI for the data.

Many thanks to dbSNP at NCBI for the data. This version were produced at WuXi Genome Center by Qin Luo.

mm9_karyosort =[‘chrM’,’chr1′, ‘chr2’, ‘chr3’, ‘chr4’, ‘chr5’, ‘chr6’, ‘chr7’, ‘chr8’, ‘chr9’, ‘chr10’, ‘chr11’, ‘chr12’, ‘chr13’, ‘chr14’, ‘chr15’, ‘chr16’, ‘chr17’, ‘chr18’, ‘chr19’, ‘chrX’, ‘chrY’,’chr1_random’,’chr3_random’,’chr4_random’,’chr5_random’,’chr7_random’,’chr8_random’,’chr9_random’,’chr13_random’,’chr16_random’,’chr17_random’,’chrX_random’,’chrY_random’,’chrUn_random’,]

 

mouse-mm9-dbsnp_132-vcf-version:

downloader:

http://www.gene-seq.com/biodownload/biodatabase/mm9_snp132.tar.gz